YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COL3_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSSRLCDS CKSTAATLFC RADAAFLCGD CDGKIHTANK LASRHERVWL CEVCEQAPAH  60
   61 VTCKADAAAL CVTCDRDIHS ANPLSRRHER VPITPFYDAV GPAKSASSSV NFVDEDGGDV 120
  121 TASWLLAKEG IEITNLFSDL DYPKIEVTSE ENSSGNDGVV PVQNKLFLNE DYFNFDLSAS 180
  181 KISQQGFNFI NQTVSTRTID VPLVPESGGV TAEMTNTETP AVQLSPAERE ARVLRYREKR 240
  241 KNRKFEKTIR YASRKAYAEM RPRIKGRFAK RTDSRENDGG DVGVYGGFGV VPSF

Type	Start	End	Confidence
Signal Peptide	1	24	0.71
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	294	0.99