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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CNGC5_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.72
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGKRENFVR VDDLDSRLPS SSVAFQQNYA SNFSGQLHPI HASNETSRSF KKGIQKGSKG  60
   61 LKSIGRSLGF GVYRAVFPED LKVSEKKIFD PQDKFLLYCN KLFVASCILS VFVDPFFFYL 120
  121 PVINAESKCL GIDRKLAITA STLRTFIDVF YLAHMALQLR TAYIAPSSRV FGRGELVIDP 180
  181 AQIAKRYLQR WFIIDFLSVL PLPQIVVWRF LQSSNGSDVL ATKQALLFIV LVQYIPRFLR 240
  241 VLPLTSELKR TAGVFAETAW AGAAYYLLLY MLASHIVGAF WYLLALERND ACWQEACIDA 300
  301 GNCSTDFLYC GNQNMDGYAV WNRAKESVLK SKCRADLDDN NPPFDFGIYT QALSSGIVSS 360
  361 QNFIVKYCYC LWWGLQNLST LGQGLETSTY PMEIIFSISL AISGLILFAL LIGNMQTYLQ 420
  421 SLTIRLEEMR VKRRDSEQWM HHRMLPQDLR ERVRRYDQYK WLETRGVDEE YLVQNLPKDL 480
  481 RRDIKRHLCL ALVRRVPLFK SMDDKLLDAI CMRLKPCLFT ESTYLVREGD PVDEMLFIIR 540
  541 GRLESVTTDG GRSGFFNRSL LKEGEFCGEE LLTWALDPKS GVNLPSSTRT VKALTEVEAF 600
  601 ALTSEELKFV ASQFRRLHSR QVQHTFRFYS HQWRTWAACF IQAAWRRYCK RKKMEEAEAE 660
  661 AAAVSSSTAG PSYSIGAAFL ATKFAANALR TIHRNRNTKI RDLVKLQKPP EPDFTAD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle