YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLCG_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	65	0.95
Transmembrane Helix	66	87	0.93
Non-Cytoplasmic	88	111	0.68
Transmembrane Helix	112	143	0.75
Cytoplasmic	144	165	0.58
Transmembrane Helix	166	184	0.67
Non-Cytoplasmic	185	189	0.62
Transmembrane Helix	190	207	0.85
Cytoplasmic	208	227	0.87
Transmembrane Helix	228	251	0.83
Non-Cytoplasmic	252	259	0.79
Transmembrane Helix	260	280	0.88
Cytoplasmic	281	288	0.61
Transmembrane Helix	289	303	0.70
Non-Cytoplasmic	304	312	0.60
Transmembrane Helix	313	334	0.91
Cytoplasmic	335	350	0.79
Transmembrane Helix	351	374	0.88
Non-Cytoplasmic	375	432	0.84
Transmembrane Helix	433	455	0.86
Cytoplasmic	456	459	0.56
Transmembrane Helix	460	480	0.77
Non-Cytoplasmic	481	487	0.69
Transmembrane Helix	488	508	0.87
Cytoplasmic	509	516	0.64
Transmembrane Helix	517	538	0.80
Non-Cytoplasmic	539	609	0.84
Transmembrane Helix	610	627	0.69
Cytoplasmic	628	763	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPNSTTEDSV AVPLLPSLRR ATNSTSQVAI VGANVCPIES LDYEIAENDF FKQDWRGRSK  60
   61 VEIFQYVFMK WLLCFCIGII VSLIGFANNL AVENLAGVKF VVTSNMMIAG RFAMGFVVFS 120
  121 VTNLILTLFA SVITAFVAPA AAGSGIPEVK AYLNGVDAPE IFSLRTLIIK IIGNISAVSA 180
  181 SLLIGKAGPM VHTGACVASI LGQGGSKRYR LTWRWLRFFK NDRDRRDLVT CGAAAGIAAS 240
  241 FRAPVGGVLF ALEEMSSWSA LLWRIFFSTA VVAIVLRALI DVCLSGKCGL FGKGGLIMFD 300
  301 VYSENASYHL GDVLPVLLLG VVGGILGSLY NFLLDKVLRA YNYIYEKGVT WKILLACAIS 360
  361 IFTSCLLFGL PFLASCQPCP VDALEECPTI GRSGNFKKYQ CPPGHYNDLA SLIFNTNDDA 420
  421 IKNLFSKNTD FEFHYFSVLV FFVTCFFLSI FSYGIVAPAG LFVPVIVTGA SYGRFVGMLL 480
  481 GSNSNLNHGL FAVLGAASFL GGTMRMTVST CVILLELTNN LLLLPMMMVV LLISKTVADG 540
  541 FNANIYNLIM KLKGFPYLYS HAEPYMRQLL VGDVVTGPLQ VFNGIEKVET IVHVLKTTNH 600
  601 NGFPVVDGPP LAAAPVLHGL ILRAHILTLL KKRVFMPSPV ACDSNTLSQF KAEEFAKKGS 660
  661 GRSDKIEDVE LSEEELNMYL DLHPFSNASP YTVVETMSLA KALILFREVG IRHLLVIPKT 720
  721 SNRPPVVGIL TRHDFMPEHI LGLHPSVSRS KWKRLRIRLP FFS