YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLCE_ARATH
Protein type:	Transmembrane
Type Confidence:	0.72
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	27	0.55
Transmembrane Helix	28	46	0.48
Non-Cytoplasmic	47	74	0.64
Transmembrane Helix	75	98	0.78
Cytoplasmic	99	124	0.58
Transmembrane Helix	125	146	0.70
Non-Cytoplasmic	147	217	0.67
Transmembrane Helix	218	242	0.85
Cytoplasmic	243	257	0.72
Transmembrane Helix	258	280	0.78
Non-Cytoplasmic	281	298	0.89
Transmembrane Helix	299	320	0.90
Cytoplasmic	321	338	0.82
Transmembrane Helix	339	357	0.93
Non-Cytoplasmic	358	379	0.81
Transmembrane Helix	380	399	0.61
Cytoplasmic	400	406	0.50
Transmembrane Helix	407	429	0.85
Non-Cytoplasmic	430	448	0.66
Transmembrane Helix	449	474	0.85
Cytoplasmic	475	479	0.66
Transmembrane Helix	480	499	0.83
Non-Cytoplasmic	500	710	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAATLPLCAA LRSPVSSRRF APIHKTDVPF QFNVVLSPFF GSVAIGGRIF PRLPAAKQET  60
   61 DQDEVGFDQQ PSQELAIASA CLVGVLTGVS VVLFNNCVHL LRDFSWDGIP DRGASWLREA 120
  121 PIGSNWLRVI LVPTIGGLVV SILNQLRESA GKSTGDSHSS LDRVKAVLRP FLKTVAACVT 180
  181 LGTGNSLGPE GPSVEIGASI AKGVNSLFNK SPQTGFSLLA AGSAAGISSG FNAAVAGCFF 240
  241 AVESVLWPSS STDSSTSLPN TTSMVILSAV TASVVSEIGL GSEPAFKVPD YDFRSPGELP 300
  301 LYLLLGALCG LVSLALSRCT SSMTSAVDSL NKDAGIPKAV FPVMGGLSVG IIALVYPEVL 360
  361 YWGFQNVDIL LEKRPFVKGL SADLLLQLVA VKIAATAWCR ASGLVGGYYA PSLFIGGAAG 420
  421 MAYGKFIGLA LAQNPDFNLS ILEVASPQAY GLVGMAATLA GVCQVPLTAV LLLFELTQDY 480
  481 RIVLPLLGAV GMSSWITSGQ SKRQETRETK ETRKRKSQEA VQSLTSSDDE SSTNNLCEVE 540
  541 SSLCLDDSLN QSEELPKSIF VSEAMRTRFA TVMMSTSLEE ALTRMLIEKQ SCALIVDPDN 600
  601 IFLGILTLSD IQEFSKARKE GNNRPKDIFV NDICSRSGGK CKVPWTVTPD MDLLAAQTIM 660
  661 NKHELSHVAV VSGSIDAPRI HPVGVLDREC ITLTRRALAT RMYLLNSLYL