YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLCB_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	80	0.99
Transmembrane Helix	81	103	0.93
Non-Cytoplasmic	104	133	0.85
Transmembrane Helix	134	156	0.87
Cytoplasmic	157	175	0.81
Transmembrane Helix	176	197	0.88
Non-Cytoplasmic	198	203	0.84
Transmembrane Helix	204	222	0.91
Cytoplasmic	223	242	0.90
Transmembrane Helix	243	266	0.85
Non-Cytoplasmic	267	276	0.81
Transmembrane Helix	277	297	0.82
Cytoplasmic	298	305	0.75
Transmembrane Helix	306	324	0.82
Non-Cytoplasmic	325	329	0.79
Transmembrane Helix	330	351	0.92
Cytoplasmic	352	369	0.92
Transmembrane Helix	370	389	0.88
Non-Cytoplasmic	390	451	0.89
Transmembrane Helix	452	472	0.89
Cytoplasmic	473	477	0.63
Transmembrane Helix	478	498	0.79
Non-Cytoplasmic	499	505	0.61
Transmembrane Helix	506	526	0.83
Cytoplasmic	527	533	0.51
Transmembrane Helix	534	555	0.74
Non-Cytoplasmic	556	780	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEEDLNQIG GNSNYNGEGG DPESNTLNQP LVKANRTLSS TPLALVGAKV SHIESLDYEI  60
   61 NENDLFKHDW RKRSKAQVLQ YVFLKWTLAC LVGLFTGLIA TLINLAVENI AGYKLLAVGH 120
  121 FLTQERYVTG LMVLVGANLG LTLVASVLCV CFAPTAAGPG IPEIKAYLNG VDTPNMFGAT 180
  181 TMIVKIVGSI GAVAAGLDLG KEGPLVHIGS CIASLLGQGG TDNHRIKWRW LRYFNNDRDR 240
  241 RDLITCGSAA GVCAAFRSPV GGVLFALEEV ATWWRSALLW RTFFSTAVVV VVLREFIEIC 300
  301 NSGKCGLFGK GGLIMFDVSH VTYTYHVTDI IPVMLIGVIG GILGSLYNHL LHKVLRLYNL 360
  361 INEKGKIHKV LLSLTVSLFT SVCLYGLPFL AKCKPCDPSI DEICPTNGRS GNFKQFHCPK 420
  421 GYYNDLATLL LTTNDDAVRN LFSSNTPNEF GMGSLWIFFV LYCILGLFTF GIATPSGLFL 480
  481 PIILMGAAYG RMLGAAMGSY TSIDQGLYAV LGAAALMAGS MRMTVSLCVI FLELTNNLLL 540
  541 LPITMIVLLI AKTVGDSFNP SIYDIILHLK GLPFLEANPE PWMRNLTVGE LGDAKPPVVT 600
  601 LQGVEKVSNI VDVLKNTTHN AFPVLDEAEV PQVGLATGAT ELHGLILRAH LVKVLKKRWF 660
  661 LTEKRRTEEW EVREKFPWDE LAEREDNFDD VAITSAEMEM YVDLHPLTNT TPYTVMENMS 720
  721 VAKALVLFRQ VGLRHLLIVP KIQASGMCPV VGILTRQDLR AYNILQAFPL LEKSKGGKTH 780
  781