YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTR7_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	41	0.81
Transmembrane Helix	42	61	0.56
Non-Cytoplasmic	62	72	0.51
Transmembrane Helix	73	92	0.90
Cytoplasmic	93	99	0.56
Transmembrane Helix	100	122	0.88
Non-Cytoplasmic	123	145	0.70
Transmembrane Helix	146	167	0.68
Cytoplasmic	168	187	0.93
Transmembrane Helix	188	211	0.91
Non-Cytoplasmic	212	218	0.89
Transmembrane Helix	219	239	0.94
Cytoplasmic	240	342	0.97
Transmembrane Helix	343	362	0.87
Non-Cytoplasmic	363	381	0.84
Transmembrane Helix	382	403	0.87
Cytoplasmic	404	419	0.96
Transmembrane Helix	420	442	0.87
Non-Cytoplasmic	443	459	0.93
Transmembrane Helix	460	482	0.85
Cytoplasmic	483	499	0.84
Transmembrane Helix	500	521	0.94
Non-Cytoplasmic	522	543	0.91
Transmembrane Helix	544	563	0.95
Cytoplasmic	564	590	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLPETKSDD ILLDAWDFQG RPADRSKTGG WASAAMILCI EAVERLTTLG IGVNLVTYLT  60
   61 GTMHLGNATA ANTVTNFLGT SFMLCLLGGF IADTFLGRYL TIAIFAAIQA TGVSILTLST 120
  121 IIPGLRPPRC NPTTSSHCEQ ASGIQLTVLY LALYLTALGT GGVKASVSGF GSDQFDETEP 180
  181 KERSKMTYFF NRFFFCINVG SLLAVTVLVY VQDDVGRKWG YGICAFAIVL ALSVFLAGTN 240
  241 RYRFKKLIGS PMTQVAAVIV AAWRNRKLEL PADPSYLYDV DDIIAAEGSM KGKQKLPHTE 300
  301 QFRSLDKAAI RDQEAGVTSN VFNKWTLSTL TDVEEVKQIV RMLPIWATCI LFWTVHAQLT 360
  361 TLSVAQSETL DRSIGSFEIP PASMAVFYVG GLLLTTAVYD RVAIRLCKKL FNYPHGLRPL 420
  421 QRIGLGLFFG SMAMAVAALV ELKRLRTAHA HGPTVKTLPL GFYLLIPQYL IVGIGEALIY 480
  481 TGQLDFFLRE CPKGMKGMST GLLLSTLALG FFFSSVLVTI VEKFTGKAHP WIADDLNKGR 540
  541 LYNFYWLVAV LVALNFLIFL VFSKWYVYKE KRLAEVGIEL DDEPSIPMGH