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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CNG12_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.80
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNHRRSKFAR IDSMGVDGKL KSVRGRLKKV YGKMKTLENW RKTVLLACVV ALAIDPLFLF  60
   61 IPLIDSQRFC FTFDKTLVAV VCVIRTFIDT FYVIHIIYYL ITETIAPRSQ ASLRGEIVVH 120
  121 SKATLKTRLL FHFIVDIISV LPIPQVVVLT LIPLSASLVS ERILKWIILS QYVPRIIRMY 180
  181 PLYKEVTRAF GTVAESKWAG AALNLFLYML HSYVFGAFWY LSSIERKSKC WRAACARTSD 240
  241 CNLTVTDLLC KRAGSDNIRF LNTSCPLIDP AQITNSTDFD FGMYIDALKS GVLEVKPKDF 300
  301 PRKFVYCFWW GLRNISALGQ NLETSNSAGE IFFAIIICVS GLLLFAVLIG NVQKYLQSST 360
  361 TRVDEMEEKR RDTEKWMSYR VIPEYLKERI RRFEDYKWRE TKGTEEEALL RSLPKDLRLE 420
  421 TKRYLYLDML KRVPWLNIMD DGWLLEAVCD RVKSVFYLAN SFIVREGHPV EEMLIVTRGK 480
  481 LKSTTGSHEM GVRNNCCDLQ DGDICGELLF NGSRLPTSTR TVMTLTEVEG FILLPDDIKF 540
  541 IASHLNVFQR QKLQRTFRLY SQQWRSWAAF FIQAAWRKHC KRKLSKTRDN ENIPQGTQLN 600
  601 LASTLYVSRF VSKALQNRRK DTADCSSSPD MSPPVPHKPA DLEFAKAEA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle