YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CNG11_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLQRRKFVR LDSTGVDGKL KSVRGRLKKV YGKMKTLENW RKTVLLACVV ALAIDPLFLF  60
   61 IPLIDSQRFC FTFDKTLVAV VCVIRTFIDT FYVIHIIYYL ITETIAPRSQ ASLRGEIVVH 120
  121 SKATLKTRLL FHFIVDIISV LPIPQVVVLT LIPLSASLVS ERILKWIILS QYVPRIIRMY 180
  181 PLYKEVTRAF GTVAESKRVG AALNFFLYML HSYVCGAFWY LSSIERKSTC WRAACARTSD 240
  241 CNLTVTDLLC KRAGSDNIRF LNTSCPLIDP AQITNSTDFD FGMYIDALKS GVLEVKPKDF 300
  301 PRKFVYCFWW GLRNISALGQ NLETSNSAGE IFFAIIICVS GLLLFAVLIG NVQKYLQSST 360
  361 TRVDEMEEKK RDTEKWMSYR EIPEYLKERI RRFEDYKWRR TKGTEEEALL RSLPKDLRLE 420
  421 TKRYLFLKLL KKVPLLQAMD DQLLDALCAR LKTVHYTEKS YIVREGEPVE DMLFIMRGNL 480
  481 ISTTTYGGRT GFFNSVDLIA GDSCGDLLTW ALYSLSSQFP ISSRTVQALT EVEGFVISAD 540
  541 DLKFVATQYR RLHSKQLQHM FRFYSLQWQT WAACFIQAAW KRHCRRKLSK ALREEEGKLH 600
  601 NTLQNDDSGG NKLNLGAAIY A

Type	Start	End	Confidence
Cytoplasmic	1	42	0.97
Transmembrane Helix	43	64	0.92
Non-Cytoplasmic	65	76	0.88
Transmembrane Helix	77	99	0.78
Cytoplasmic	100	128	0.86
Transmembrane Helix	129	152	0.83
Non-Cytoplasmic	153	200	0.88
Transmembrane Helix	201	222	0.85
Cytoplasmic	223	330	0.90
Transmembrane Helix	331	352	0.91
Non-Cytoplasmic	353	621	0.83