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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CNG10_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.65
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFSHDNRVR FKDEGKPLSS EYGYGRKARP SLDRVFKNVK WGFKKPLSFP SHKDPDHKET  60
   61 SSVTRKNIIN PQDSFLQNWN KIFLFACVVA LAIDPLFFYI PIVDSARHCL TLDSKLEIAA 120
  121 SLLRTLIDAF YIIHIVFQFR TAYIAPSSRV FGRGELVDDA KAIALKYLSS YFIIDLLSIL 180
  181 PLPQIVVLAV IPSVNQPVSL LTKDYLKFSI IAQYVPRILR MYPLYTEVTR TSGIVTETAW 240
  241 AGAAWNLSLY MLASHVFGAL WYLISVERED RCWQEACEKT KGCNMKFLYC ENDRNVSNNF 300
  301 LTTSCPFLDP GDITNSTIFN FGIFTDALKS GVVESHDFWK KFFYCFWWGL RNLSALGQNL 360
  361 QTSKFVGEII FAISICISGL VLFALLIGNM QKYLESTTVR EEEMRVRKRD AEQWMSHRML 420
  421 PEDLRKRIRR YEQYRWQETR GVEEETLLRN LPKDLRRDIK RHLCLDLLKK VPLFEIMDEQ 480
  481 LLDAVCDRLR PVLYTENSYV IREGDPVGEM LFVMRGRLVS ATTNGGRSGF FNAVNLKASD 540
  541 FCGEDLLPWA LDPQSSSHFP ISTRTVQALT EVEAFALTAE DLKSVASQFR RLHSKQLQHT 600
  601 FRFYSVQWRT WSVSFIQAAW RRYCRRKLAK SLRDEEDRLR EALASQDKEH NAATVSSSLS 660
  661 LGGALYASRF ASNALHNLRH NISNLPPRYT LPLLPQKPTE PDFTANHTTD P

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle