YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CDS1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEENVTSSP STPVHRLRHR RRSNEVVTDG DKVNASPLLV NDRNKYKSFM VRTYSTLWMI  60
   61 GGFVLVVYMG HLYITAMVVV IQIFMAKELF NLLRKAPEDK CLPYIKQLNW HFFFTAMLFV 120
  121 YGRILSQRLA NTMTADQFFY RLVSGLIKYH MAICYLLYII GFMWFILTLK KKMYKYQFGQ 180
  181 YAWTHMILIV VFTQSSFTVA NIFEGIFWFL LPASLIIIND IFAYIFGFFF GRTPLIKLSP 240
  241 KKTWEGFIGA SVTTIISAFV LANILGRFPW LTCPRQDLST GWLQCDADPL FKPEPFALPA 300
  301 WIPEWFPWKE MTILPVQWHA LCLGLFASII APFGGFFASG FKRAFKIKDF GDSIPGHGGI 360
  361 TDRMDCQMVM AVFAYIYLQS FIVSQSVSVD KILDQILTNL TFEEQQALFV KLGQMLKDKL 420
  421 S

Type	Start	End	Confidence
Cytoplasmic	1	48	0.55
Transmembrane Helix	49	70	0.63
Non-Cytoplasmic	71	71	0.27
Transmembrane Helix	72	86	0.82
Cytoplasmic	87	106	0.69
Transmembrane Helix	107	125	0.78
Non-Cytoplasmic	126	145	0.92
Transmembrane Helix	146	168	0.92
Cytoplasmic	169	180	0.87
Transmembrane Helix	181	200	0.92
Non-Cytoplasmic	201	207	0.68
Transmembrane Helix	208	230	0.89
Cytoplasmic	231	245	0.81
Transmembrane Helix	246	265	0.93
Non-Cytoplasmic	266	315	0.95
Transmembrane Helix	316	338	0.93
Cytoplasmic	339	421	0.83