YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CCI1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGSSSPSLW LAPNPSKRWG ELFFLFYTPF WLTLCLGIVV PYKLYETFTE LEYLLLALVS  60
   61 AVPAFVIPML LVGKADRSLC WKDRYWVKAN LWIIVFSYVG NYFWTHYFFK VLGASYTFPS 120
  121 WKMNNVPHTT FFLTHVCFLF YHVASNITLR RLRHSTADLP DSLKWCFEAA WILALSYFIA 180
  181 YLETIAIANF PYYEFVDRSA MYRVGCLFYA IYFIVSFPMF FRMDEKSTDE WDLSRVAVDA 240
  241 LGAAMLVTII LDLWRLFLGP IVPLPEGQNC LQSGLPWFSN

Type	Start	End	Confidence
Cytoplasmic	1	20	0.97
Transmembrane Helix	21	42	0.93
Non-Cytoplasmic	43	52	0.81
Transmembrane Helix	53	73	0.95
Cytoplasmic	74	85	0.92
Transmembrane Helix	86	108	0.86
Non-Cytoplasmic	109	127	0.91
Transmembrane Helix	128	149	0.87
Cytoplasmic	150	164	0.94
Transmembrane Helix	165	188	0.82
Non-Cytoplasmic	189	199	0.84
Transmembrane Helix	200	221	0.93
Cytoplasmic	222	235	0.87
Transmembrane Helix	236	256	0.87
Non-Cytoplasmic	257	280	0.90