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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|7487380, gi|4...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.82
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIMVALGKT RGRETVMLCL SNSLKFYYHL SFLCFLFLAF LRNLGNTIEM KKLRYVHLNL  60
   61 LLLLLPLINL QFPTLSLAQD YDEPKKDDTP PPGLARCNGV YMSYSSGGRE KLYPRTTNAT 120
  121 AQAWSFKSTA MIVNTGIEEV KGWQMFVGFH HREIIVSATG AVSSDGDFPV DATNGTTFIG 180
  181 SQNTDLKTSI LTAGDYTQIS TNIEITGTVF GGKGTATPMP KSIKLTNDGW QCPAATSKGG 240
  241 TMQVCCKRNP KFKAKEKVKT KFMPRQHGDL NIIYDVLQAY ASSYMAQVTI DNTSPLGRLD 300
  301 HWNLTWEWMR GEFIHSMRGA YAAEKNTLEC LSSKAGQFYG DLDFSQVANC QKKPIIKDLP 360
  361 AERKDDNVTG KLPFCCKNGT LLPTHMDPSK SKAIFQLQVY KVPPDQNRTA FFPPRNWKID 420
  421 GIVNPTYKCG PPIRVDATPF PDPSGLQATT YAIASWQVIC NITKPKPQAA RCCVSFSAFY 480
  481 NDSAIPCNTC ACGCKDIDTD TCNANARQLL LPTDTLLVPF DNRTLKAKVW AKQKHMAYPK 540
  541 KLPCPDNCGI SLNWHLNSDY GNGWSARVTL FNWGNNAVED WFGALDLGKA GLGYENIYSF 600
  601 NGSRVPPKNQ TIFFQGLPGM NYLIGITNGT NPARDPQIPG KMQSVISFKK KNLGSLNIIG 660
  661 GDGFPKRVFF NGEECELPKY FPKKSSGMRL SGIRFLPSIL LAITTFHAIT DRLLTGV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle