YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: COBL8_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.77
Topology Confidence: 0.66
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLTRNFILW ILLSSLFTAI QLTSSQRNTP PPRSKDADLC NGVFVSYTYL TGTKIKPNDT  60
   61 KNQPYRFESE ITVLNNGRDE LKSWQVFVKF AHREILVSAT NAVLSDGSSL PASVENGTIF 120
  121 AGFPSADLKT AIMTAGDVTQ MEARVELVGT QFGVAPPSVP LPKNITLVND GWSCPKPTQQ 180
  181 GSNVLQVCCT PNPNITTSKI GQKFLPRQEG DLTIMYDVTR AYQSSYSAQV TIENHNLLGR 240
  241 LDNWDLSFMW MKDEFLFSTK GAYPSVVDSS DCITGPQAKY YKDLDFSNVM SCARRPHIID 300
  301 LPLTKYNDTN VGRIPYCCRN GTILPRSMDP EKSKSVFQIE VYKMPPDLNI SSITPPQSWQ 360
  361 IKGNLNPDYK CGPPLRVSSS QFPDTSGLPS NKSAFASWQV VCNITQPTPP KCCVSFSSYF 420
  421 NDSVIPCKTC ACGGCSSDRV ARTCSTTSPA LPLPYQALLI PFDNRTKLTN AWAVLKNRKV 480
  481 PDPLPCGDNC GVSINWHLAT DYRGGWTARV TLFNWGDTDF VDWFTAVELR NAAPGFQKAY 540
  541 SFNGSIIAVN GKNTTVLMEG LPGLNYLLAE KDGKNPSEDF RIPGKQQSVI SFTKKLTPGI 600
  601 KVGSKDGFPT KVLFNGQECS LPSVLPTSNS HRKHVSTFLL ILTPFLALLF LRI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle