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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: COBL7_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.79
Topology Confidence: 0.65
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSAPNFIPR LLLLSLLIVS IPLTSSQSDA NTTNPSPSPP SDSDLCNGVF VSYTHTKGSK  60
   61 IPPNDTANQP YRFESVITVL NHGRDELKSW RVFVKFAHRE ILVSASNAVL SDGSSLPVSV 120
  121 ENGTVFAGYP SSDLKSAIQT AGDVTQMQAR VELVGTQFGV APPNVPLPKN ITLATDGWKC 180
  181 PKATQKGTNV LQVCCIPDPD YDNREIIDNE FLPRKDGDLT IMYDVVRSYS SNYMAQVTME 240
  241 NHNPLGRLDN WKLSFDWMRD EFIYTMKGAY PSIVDSSDCV DGPQAKHYQD LDFSNVLSCA 300
  301 RRPTVIDLPP TKYNDSTFGL IPFCCRNGTI LPRSMDPSKS SSVFQMQVYK MPPDLNISAL 360
  361 SPPQNWRING TLNPDYKCGP PVRVSPSQFV DPSGLPSNRT AFASWQVVCN ITQPKDASPR 420
  421 CCVSFSAYFN DSIVPCKTCA CGCSSNKAAR ACSATAPSLL LPQQALLVPF ENRTELTVAW 480
  481 AYLKQRPVPN PMPCGDNCGV SINWHLATDY RGGWTARVTV FNWGETDFVD WFTAVQMKNA 540
  541 APGFEKAYSF NASTIGINGK NNTIFMEGLP GLNYLVAERD GENPLKNPRI PGKQQSVMSF 600
  601 TKKLTPGINV PGGDGFPSKV FFNGEECSLP TILPMRSSQH RKHISVFLLA LPVLALLILR 660
  661 A

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle