YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COBL6_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.83
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAMLNLLLV VTVILCSILS PTRFMIMIDK MVADGYDPLD PFGKIIIKWD LLLSSPGQHH  60
   61 VQVTLENMQE YRHVEKPGWK LSWHWLNQEV IWDMKGAETT EQGNCSAFAS SGNLPHCCLE 120
  121 RPTIVDLLPG ASLNVQVANC CRGGVLTSMS QDHANHVSAF HMTVGSSPDG PEEFNMPSNF 180
  181 DIGVPGYSCD NATSVSPTKF STDKGRRKTQ ALATWEAVCV YSQFRSSPSP KCCVSLSAFY 240
  241 YQNIVPCPTC SCGCSSSHCV KDGELPPYLE QKHDPDEEVS PVVKCSDHMC PIRIHWHVKV 300
  301 NYREYWRVKI TATNFNTMKN YTNWNLVVLH PNLKSVQQVF SFNYKSLTPY QNSINDTGMF 360
  361 WGVQFYNDVL LQEGKIGNVQ TELLLKKDMG NFTFREGWAF PRRILFNGDE CVMPSPDDFP 420
  421 RLPKSAHSSS SSSAVISSVS VVFCFLLHHL LLLV

Type	Start	End	Confidence
Signal Peptide	1	21	0.88
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	432	0.93
Transmembrane Helix	433	452	0.88
Cytoplasmic	453	454	0.72