YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COBL4_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.74
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLLFSFCFF FFMIIFTATA YDPLDPSGNI TIKWDIMSWT ADGYVATVTM NNFQIYRHIQ  60
   61 NPGWTLGWTW AKKEVIWSMV GAQTTEQGDC SKFKGNVPHC CKKTPTVVDL LPGVPYNQQF 120
  121 SNCCKGGVIG AWGQDPSAAV SQFQVSAGLA GTTNKTVKLP KNFTLLGPGP GYTCGPAKIV 180
  181 PSTVFLTTDK RRKTQALMTW NVTCTYSQFL ARKHPSCCVS FSSFYNDTIT PCPSCACGCE 240
  241 NKKSCVKADS KILTKKGLNT PKKDNTPLLQ CTHHMCPVRV HWHVKTNYKD YWRVKIAITN 300
  301 FNYRMNHTLW TLAIQHPNLN NVTQVFSFDY KPVSPYGSIN DTGMFYGTKF YNDLLMEAGP 360
  361 SGNVQSEVLL QKDQKTFTFK QGWAFPRKVY FNGDECMLPP PDSYPFLPNS AQGNFASFSL 420
  421 TILLLLFISI W

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	410	0.99
Transmembrane Helix	411	430	0.69
Cytoplasmic	431	431	0.75