YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CB4C_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTTAAAAS GIFGIRIQDP RPGTGRVQAR FGFSFGKKKP APPPKKSRQV QDDGDRLVWF  60
   61 PGANPPEWLD GSMIGDRGFD PFGLGKPAEY LQYDFDGLDQ NLAKNVAGDI IGIIQESSEI 120
  121 KPTPFQPYTE VFGIQRFREC ELIHGRWAML GTLGAIAVEA LTGIAWQDAG KVELVEGSSY 180
  181 LGQPLPFSLT TLIWIEVLVV GYIEFQRNSE LDPEKRIYPG GYFDPLGLAA DPEKLDTLKL 240
  241 AEIKHSRLAM VAFLIFALQA AFTGKGPVSF LATFNN

Type	Start	End	Confidence
Cytoplasmic	1	144	0.98
Transmembrane Helix	145	166	0.89
Non-Cytoplasmic	167	184	0.85
Transmembrane Helix	185	205	0.87
Cytoplasmic	206	247	0.95
Transmembrane Helix	248	268	0.84
Non-Cytoplasmic	269	276	0.80