YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CB4B_ARATH
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAATSTAAAA SSIMGTRVVS DISSNSSRFT ARFGFGTKKA SPKKAKTVIS DRPLWFPGAK  60
   61 SPEYLDGSLV GDYGFDPFGL GKPAEYLQFD LDSLDQNLAK NLYGEVIGTR TEAVDPKSTP 120
  121 FQPYSEVFGL QRFRECELIH GRWAMLATLG AITVEWLTGV TWQDAGKVEL VDGSSYLGQP 180
  181 LPFSISTLIW IEVLVIGYIE FQRNAELDSE KRLYPGGKFF DPLGLASDPV KKAQLQLAEI 240
  241 KHARLAMVGF LGFAVQAAAT GKGPLNNWAT HLSDPLHTTI IDTFSSS

Type	Start	End	Confidence
Cytoplasmic	1	138	0.74
Transmembrane Helix	139	159	0.69
Non-Cytoplasmic	160	180	0.85
Transmembrane Helix	181	199	0.72
Cytoplasmic	200	241	0.75
Transmembrane Helix	242	260	0.56
Non-Cytoplasmic	261	287	0.75