YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CA4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATVTTHASA SIFRPCTSKP RFLTGSSGRL NRDLSFTSIG SSAKTSSFKV EAKKGEWLPG  60
   61 LASPDYLTGS LAGDNGFDPL GLAEDPENLK WFVQAELVNG RWAMLGVAGM LLPEVFTKIG 120
  121 IINVPEWYDA GKEQYFASSS TLFVIEFILF HYVEIRRWQD IKNPGSVNQD PIFKQYSLPK 180
  181 GEVGYPGGIF NPLNFAPTQE AKEKELANGR LAMLAFLGFV VQHNVTGKGP FENLLQHLSD 240
  241 PWHNTIVQTF N

Type	Start	End	Confidence
Cytoplasmic	1	99	0.65
Transmembrane Helix	100	117	0.59
Non-Cytoplasmic	118	134	0.81
Transmembrane Helix	135	153	0.61
Cytoplasmic	154	251	0.56