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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CALX2_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.91
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRERIITFVS LLLVALLSFP SVSYCDDQTI LYESFDEPFD GRWVVSEKAE YQGVWKHEKS  60
   61 EGHDDYGLLV SEKAKKYGIV KELDVDEPLN LNEGTVVLQY EARFQEGLEC GGAYLKYLRP 120
  121 QEAGWVPQGF DNDSPYSIMF GPDKCGATNK VHFILKHKNP KSGEFVEHHL KFPPSVPFDM 180
  181 LSHVYTAVLK SDNEVRILVD GEEKKKGNLL SAEDFEPPLI PSKTIPDPED KKPEDWDERA 240
  241 KIPDPNAVKP DDWDEDAPME IEDEEAEKPE GWLDDEPVEV EDPEASKPED WDDEEDGEWE 300
  301 APKVSNTKCE AAPGCGEWKR PMKRNPAYKG KWSSPLIDNP AYKGIWKPRD IPNPDYFELE 360
  361 RPNLEPIAAI GIEIWTMQDG ILFDNILISK DEKVAETYRQ STWKPKFDVE KEKQKAEDEA 420
  421 AGEADGLKSY QKKVFDLLYK VADISFLSAY KSKIMELIEK AETQPNLTIG VLISIVIVFL 480
  481 SLFFKLIFGG AKAKVEKKKP ETAAETSTSE AKTEEKAEAV AAPRKRQTRR ES

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle