YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	C76C2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIIFEQALF PLFCFVLSFF IIFFTTTRPR SSRKVVPSPP GPPRLPIIGN IHLVGRNPHH  60
   61 SFADLSKTYG PIMSLKFGSL NTVVVTSPEA AREVLRTYDQ ILSSRTPTNS IRSINHDKVS 120
  121 VVWLPPSSSR WRLLRKLSAT QLFSPQRIEA TKTLRENKVK ELVSFMSESS EREEAVDISR 180
  181 ATFITALNII SNILFSVDLG NYDSNKSGVF QDTVIGVMEA VGNPDAANFF PFLGFLDLQG 240
  241 NRKTLKACSE RLFKVFRGFI DAKLAEKSLR DTNSKDVRER DFVDVLLDLT EGDEAELNTN 300
  301 DIVHLLLDLF GAGTDTNSST VEWAMAELLR NPETMVKAQA EIDCVIGQKG VVEESDISAL 360
  361 PYLQAVVKET FRLHPAAPLL VPRKAESDVE VLGFMVPKDT QVFVNVWAIG RDPNVWENSS 420
  421 RFKPERFLGK DIDLRGRDYE LTPFGAGRRI CPGLPLAVKT VPLMLASLLY SFDWKLPNGV 480
  481 GSEDLDMDET FGLTLHKTNP LHAVPVKKRG RN

Type	Start	End	Confidence
Cytoplasmic	1	7	0.72
Transmembrane Helix	8	27	0.92
Non-Cytoplasmic	28	512	0.84