YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	C79B2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTFTSNSSD LTTTATETSS FSTLYLLSTL QAFVAITLVM LLKKLMTDPN KKKPYLPPGP  60
   61 TGWPIIGMIP TMLKSRPVFR WLHSIMKQLN TEIACVKLGN THVITVTCPK IAREILKQQD 120
  121 ALFASRPLTY AQKILSNGYK TCVITPFGDQ FKKMRKVVMT ELVCPARHRW LHQKRSEEND 180
  181 HLTAWVYNMV KNSGSVDFRF MTRHYCGNAI KKLMFGTRTF SKNTAPDGGP TVEDVEHMEA 240
  241 MFEALGFTFA FCISDYLPML TGLDLNGHEK IMRESSAIMD KYHDPIIDER IKMWREGKRT 300
  301 QIEDFLDIFI SIKDEQGNPL LTADEIKPTI KELVMAAPDN PSNAVEWAMA EMVNKPEILR 360
  361 KAMEEIDRVV GKERLVQESD IPKLNYVKAI LREAFRLHPV AAFNLPHVAL SDTTVAGYHI 420
  421 PKGSQVLLSR YGLGRNPKVW ADPLCFKPER HLNECSEVTL TENDLRFISF STGKRGCAAP 480
  481 ALGTALTTMM LARLLQGFTW KLPENETRVE LMESSHDMFL AKPLVMVGDL RLPEHLYPTV 540
  541 K

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.82
Transmembrane Helix	21	42	0.78
Cytoplasmic	43	54	0.63
Transmembrane Helix	55	73	0.55
Non-Cytoplasmic	74	541	0.80