YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	C71BF_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.79
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVFLCFLVL LPLILIFLNV LKPSKYKLPP GPKKLPIIGN LHQRRTLHPR NRRNLAEMYG  60
   61 PVALLQYGFV PVVAISSKEA AEEVLKINDL ECCSRPEAAG MRATFYNFKD IGMAPFGDEW 120
  121 SLMRKLSVVE LFSVKKLQSF KYIIEEENNL CVKKLSEFAT RQSPVNLERA IFTLVGNIVC 180
  181 RIGYGINLYE CDFFEADRVV DLVLKAEAVI RETVFSDFFP GRIGRFIDCI SGQNRRLKNN 240
  241 FSVVDTFFQN VLNEHLKPGR ESSTIVDLMI DMKKKQENDG DALKFTTDHL KGMISDIFVA 300
  301 GIGGVAGITL WGMTELIRNP RVMKKVQDEI RTTLGDKKER IKEEDLNQLH YFKLVVKETL 360
  361 RLHPTTPLLL PRQTMSHIKI QGYDVPAKTQ ILVNVYAMGR DPKLWENADE FNPDRFLDSS 420
  421 VDFKGKNYEF IPFGSGRRIC PGMTMGTILV EMALLNLLYF FDWGLAKQEE AKEIINGEEN 480
  481 FLAFFQVLHH

Type	Start	End	Confidence
Signal Peptide	1	23	0.94
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	292	0.99
Transmembrane Helix	293	314	0.67
Cytoplasmic	315	438	0.71
Transmembrane Helix	439	460	0.54
Non-Cytoplasmic	461	490	0.70