YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	C71BE_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.35
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIWWFIVGAS FFFAFILIAK DTRTTKKNLP PGPPRLPIIG NLHQLGSKPQ RSLFKLSEKY  60
   61 GSLMSLKFGN VSAVVASTPE TVKDVLKTFD AECCSRPYMT YPARVTYNFN DLAFSPYSKY 120
  121 WREVRKMTVI ELYTAKRVKS FQNVRQEEVA SFVDFIKQHA SLEKTVNMKQ KLVKLSGSVI 180
  181 CKVGFGISLE WSKLANTYEE VIQGTMEVVG RFAAADYFPI IGRIIDRITG LHSKCEKVFK 240
  241 EMDSFFDQSI KHHLEDTNIK DDIIGLLLKM EKGETGLGEF QLTRNHTKGI LLNVLIAGVD 300
  301 TSGHTVTWVM THLIKNPRVM KKAQAEVREV IKNKDDITEE DIERLEYLKM VIKETLRINP 360
  361 LVPLLIPREA SKYIKIGGYD IPKKTWIYVN IWAVQRNPNV WKDPEVFIPE RFMHSEIDYK 420
  421 GVDFELLPFG SGRRMCPGMG LGMALVHLTL INLLYRFDWK LPEGMNIEDV DLEESYGLVC 480
  481 PKKVPLQLIP VLTQWT

Type	Start	End	Confidence
Signal Peptide	1	19	0.77
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	496	0.87