YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	C71BD_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.32
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLWYIIVVF VFFASIFIAK NTRKTKKNLP PGPPRLPIIG NLHQLGSKPH RSMFKLSEKY  60
   61 GPLVYLKLGK VPSVVASTPE TVKDVLKTFD KDCCSRAFLT YPARISYNLK DLAFAPYSKY 120
  121 WKAVRKMTVV ELYTAKRVKS FRNIREEEVA SFVEFIKHSA SLEEIVNLNQ TLVKLSGSVI 180
  181 CRVGFGINLE GSKLENTYEE VIHGTMEVLG SFAASDYFPV IGGIIDRITG LHNKCEKVFK 240
  241 GTDSFFDHCI KHHLEDGGSK DDIVDLLLKV ERGEIGLGEF QFTRNHTKGI LLDILLAGVD 300
  301 TSGHTITWVM THLIKNPRVM KKAQAEVREV IKNKDNITEE DIEGLEYLKM VVKETLRINP 360
  361 LVPLLTPREA SKDVKIGGYN IPKKTWIHVN IWAIHRNPNV WKDPEAFIPE RFMDNQIDYK 420
  421 GLNFELLPFG SGRRICPGIG MGMALIHLTL INLLYRFDWK LPEGMEVEDV DLEESYGLVC 480
  481 PKKVPLELIP VLTQWT

Type	Start	End	Confidence
Signal Peptide	1	19	0.49
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	434	0.83
Transmembrane Helix	435	455	0.61
Cytoplasmic	456	496	0.52