YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	C71BC_ARATH
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.21
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLWYIIVAF VFFSSMIIVR IIRKTKKNLP PGPPRLPIIG NLHQLGSKPH RSMFKLSETY  60
   61 GPLMSLKFGS VSTVVASTPE TVKEVLKTFD VECCSRPNMT YPARVTYNLK DLCFSPYSKY 120
  121 WREVRKMTVV ELYTAKRVQS FQHTRKEEVA ALVDFIKQAA SLEKPVNLNK KLMKLSGSVI 180
  181 CRVAFGINLQ GSKLENTYEE VIQGTVELVG SFAAADYFPV VGRIIDRITG LHSKCEKLFK 240
  241 AMDAFFDQSI KHHLEDEIIK DDIIDLLLKM ERGETTLGEF QLTRDHTKGI LANILNAGID 300
  301 TSAQVMTWVM TYLISNPRVL KKAQAEVREV IKHKDDIIEE DIERLQYLKM VIKETFRINP 360
  361 LVPLLIPREA SKDVKIGGYN IPKKTWIHVN IWAIHRNPNV WKDPEAFIPE RFMDSQIDYK 420
  421 GLNFELLPFG SGRRICPGIG MGMALVHLTL INLLYRFDWK LPEGMKVADV DLEESYGLVC 480
  481 PKKIPLQLIP VLTQWT

Type	Start	End	Confidence
Cytoplasmic	1	3	0.21
Transmembrane Helix	4	22	0.73
Non-Cytoplasmic	23	434	0.54
Transmembrane Helix	435	455	0.62
Cytoplasmic	456	496	0.45