YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	C71BB_ARATH
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLWYIIVAF VFFSTIIIVR NTRKTKKNLP PGPPRLPIIG NLHQLGSKPH SSMFKLSEKY  60
   61 GPLMALRFGS VSTVVASTPE TVKEVLKTFD AECCSRPYMT YPARLTYNLK DIGFCPYTKY 120
  121 WREVRKMTVV ELYTAKRVQS FQHTRKEEVA SLVDFITQAA SLEKPVNLNT KLMKLSGSVI 180
  181 CRVVFGINLK GSKLENLYEE VIQGTMEVVG SFAAADYFPI IGRIIDRITG LHSKCEKIFK 240
  241 AMDAFFDQSI KHHLEDESIK DDIIDLLLKM ERGEIELGEF QLTRDNTKGI LFNILNAGID 300
  301 TSAQVMTWVM TYLISNPRVM KKAQAEVREV IKNKDDIIEE DIERLEYLKM VVKETFRVLP 360
  361 LVPLLIPREA SKDVKIGGYD IPKKTWIHVN IWAIHRNPNV WKDPEAFIPE RFMDNQIDYK 420
  421 GLNFEFLPFG SGRRMCPGIG MGMALVHLTL INLLYRFDWK LPEGMEVEDV DLEESYGLVC 480
  481 PKKVPLQLIP VLTQWS

Type	Start	End	Confidence
Non-Cytoplasmic	1	434	0.69
Transmembrane Helix	435	455	0.58
Cytoplasmic	456	496	0.46