YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	C71AQ_ARATH
Protein type:	Transmembrane
Type Confidence:	0.78
Topology Confidence:	0.30
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMIMFFLLCS IIFVVTIIIF RKQKRGKKRN TLPSPPGLPL IGNLHQLGRH PHRSLCSLSH  60
   61 RYGPLMLLHF GRVPVLVVSS AELARDVLKT HDRVFASRPR SKIFEKLLYD KHDVASAPYG 120
  121 EYWRQMKSVC VLHLFSNKMV RSFREVREEE ISLMMEKIRK SISLPVNLSK ILVSLTNDVI 180
  181 CKVALGRKYG GETDFKELME RLNKLLGTFS VGSYVPWLAW IDWIRGLDCQ LEKTANDVDK 240
  241 FFERVVQDHV DGNRDMTDFV DVLLAIQRDK TVGFEINRVS IKAIVMNVFV GGTDTSSTLM 300
  301 EWAMTELLRH PKCLKRLQEE VRTICKDKSS VSEEEIQNMS YLKAVIKEAL RLHPPLPLMV 360
  361 PHESTQDVRL GDHHIPAGTQ VLINAWAIGR EAATWGPDVE EFRPERHLDS SVDYRGQAFE 420
  421 LIPFGSGRRI CPAISFAVVL NEVVLANLVH RFDWRLSVES TEDQTEVAES TGIAIHRMFP 480
  481 LYAIASNTT

Type	Start	End	Confidence
Non-Cytoplasmic	1	3	0.66
Transmembrane Helix	4	21	0.73
Cytoplasmic	22	204	0.53
Transmembrane Helix	205	221	0.30
Non-Cytoplasmic	222	489	0.79