YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	C71AL_ARATH
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESMTMIILQ SLIIFITILF FKKQKRGKKS NTPRSPPRLP LIGNLHQLGH HPHRSLCSLS  60
   61 HRYGPLMLLH LGRVPVLVVS SADVARDILK THDRVFASRP RSKLFEKLFY DGRDVAFAPY 120
  121 GEYWRQIKSV CVLRLLSNKM VTSFRNVRQE EISLMMEKIQ KSSSLQVNVS ELLGSLTNDV 180
  181 ISRIALGRKY SGETDSKELM KRLMMLMGEF SVGTYVPWLG WIDWISGLDG QLNKTGNDLD 240
  241 EFLEKVVQDH VDGDGQRTDF VDVLLRIQRE KSIGFEIDRL CIKAIVLDVL VAGTDSSYAL 300
  301 MDWAMTELLR HPECLRTLQE EVRTICKGNL SVSEEDIQNM SYLKAVIKET TRLHPPLPLL 360
  361 APHESIQDVI LGDYHIPAGT QVMINAWAIG REAATWGPDA EKFRPERHLD SSVDFRGHNF 420
  421 ELVPFGAGRR ICPAISFAVV LIEVALANFV HRYDWKLPED SKENQTNVAE STGMVIHRLF 480
  481 PLYAIASSTT

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.81
Transmembrane Helix	6	21	0.81
Cytoplasmic	22	205	0.74
Transmembrane Helix	206	222	0.57
Non-Cytoplasmic	223	490	0.81