YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	C71AG_ARATH
Protein type:	Transmembrane
Type Confidence:	0.56
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMMILISLC LTTFLTILLF FKSLLKRPNS NLPPSPWRLP VIGNLHQLSL HPHRALSSLS  60
   61 ARHGPLMLLR FGRVPVLIVS SADVAHDVMK THDLKFANRP ITKSAHKISN GGRDLVFAPY 120
  121 GEYWRNVKSL CTIHLLSNKM VQSSEKRREE EITLLMETLE EASLSSSSVN LSKLITNMVS 180
  181 DIMGKVVLGK KYSGEEGTID VKTITKSFLD AVGLSPVGEY IPSLAWIGKI TGSDGKLEKI 240
  241 TKQFGDFIEK VLQEHEDTTA DKETPDFVDM LLTIQRDETA QCQLDKSDLK VIIFEMFLGS 300
  301 TTTTSAVIEW AMTRLMRNPE CLKKLQDEIR SVSKMNSYVS GKEVENMNYL KAVIKEVLRL 360
  361 HPPLPLLVPR LLSEDVKLKG YDITAGTQVI INAWAIQRDT ATWGSDAQEF RPERHFDSTW 420
  421 DFVGRNFKYI PFGAGRRLCP GIGLGSVMAS VTLANLVKRF DWRVEDGPSG YDKPDLVEGA 480
  481 GIDVCRKFPL VVFPSSA

Type	Start	End	Confidence
Cytoplasmic	1	4	0.46
Transmembrane Helix	5	25	0.51
Non-Cytoplasmic	26	497	0.93