YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BI1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAFSSFFDS QPGSRSWSYD SLKNFRQISP AVQNHLKRVY LTLCCALVAS AFGAYLHVLW  60
   61 NIGGILTTIG CIGTMIWLLS CPPYEHQKRL SLLFVSAVLE GASVGPLIKV AIDVDPSILI 120
  121 TAFVGTAIAF VCFSAAAMLA RRREYLYLGG LLSSGLSMLM WLQFASSIFG GSASIFKFEL 180
  181 YFGLLIFVGY MVVDTQEIIE KAHLGDMDYV KHSLTLFTDF VAVFVRILII MLKNSADKEE 240
  241 KKKKRRN

Type	Start	End	Confidence
Cytoplasmic	1	35	0.97
Transmembrane Helix	36	56	0.88
Non-Cytoplasmic	57	61	0.69
Transmembrane Helix	62	81	0.93
Cytoplasmic	82	89	0.89
Transmembrane Helix	90	112	0.90
Non-Cytoplasmic	113	117	0.89
Transmembrane Helix	118	139	0.94
Cytoplasmic	140	145	0.86
Transmembrane Helix	146	169	0.73
Non-Cytoplasmic	170	212	0.74
Transmembrane Helix	213	232	0.81
Cytoplasmic	233	247	0.84