YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AOX1C_ARATH
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITTLLRRSL LDASKQATSI NGILFHQLAP AKYFRVPAVG GLRDFSKMTF EKKKTSEEEE  60
   61 GSGDGVKVND QGNKGEQLIV SYWGVKPMKI TKEDGTEWKW SCFRPWETYK ADLTIDLKKH 120
  121 HVPSTLPDKI AYWMVKSLRW PTDLFFQRRY GCRAIMLETV AAVPGMVGGM LMHFKSLRRF 180
  181 EQSGGWIKAL LEEAENERMH LMTFMEVAKP KWYERALVIS VQGVFFNAYL IGYIISPKFA 240
  241 HRMVGYLEEE AIHSYTEFLK ELDNGNIENV PAPAIAVDYW RLEADATLRD VVMVVRADEA 300
  301 HHRDVNHYAS DIHYQGHELK EAPAPIGYH

Type	Start	End	Confidence
Cytoplasmic	1	153	0.75
Transmembrane Helix	154	174	0.80
Non-Cytoplasmic	175	329	0.64