YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AOX1B_ARATH
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMMSRRYGAK LMETAVTHSH LLNPRVPLVT ENIRVPAMGV VRVFSKMTFE KKKTTEEKGS  60
   61 SGGKADQGNK GEQLIVSYWG VKPMKITKED GTEWKWSCFR PWETYKSDLT IDLKKHHVPS 120
  121 TLPDKLAYWT VKSLRWPTDL FFQRRYGCRA MMLETVAAVP GMVGGMLVHC KSLRRFEQSG 180
  181 GWIKALLEEA ENERMHLMTF MEVAKPNWYE RALVIAVQGI FFNAYFLGYL ISPKFAHRMV 240
  241 GYLEEEAIHS YTEFLKELDN GNIENVPAPA IAIDYWRLEA DATLRDVVMV VRADEAHHRD 300
  301 VNHYASDIHY QGRELKEAPA PIGYH

Type	Start	End	Confidence
Cytoplasmic	1	149	0.70
Transmembrane Helix	150	170	0.66
Non-Cytoplasmic	171	211	0.83
Transmembrane Helix	212	231	0.61
Cytoplasmic	232	325	0.57