YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AOX1A_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMITRGGAKA AKSLLVAAGP RLFSTVRTVS SHEALSASHI LKPGVTSAWI WTRAPTIGGM  60
   61 RFASTITLGE KTPMKEEDAN QKKTENESTG GDAAGGNNKG DKGIASYWGV EPNKITKEDG 120
  121 SEWKWNCFRP WETYKADITI DLKKHHVPTT FLDRIAYWTV KSLRWPTDLF FQRRYGCRAM 180
  181 MLETVAAVPG MVGGMLLHCK SLRRFEQSGG WIKALLEEAE NERMHLMTFM EVAKPKWYER 240
  241 ALVITVQGVF FNAYFLGYLI SPKFAHRMVG YLEEEAIHSY TEFLKELDKG NIENVPAPAI 300
  301 AIDYWRLPAD ATLRDVVMVV RADEAHHRDV NHFASDIHYQ GRELKEAPAP IGYH

Type	Start	End	Confidence
Signal Peptide	1	28	0.59
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	354	0.75