YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AVP1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.77
Transmembrane Helix	14	34	0.93
Cytoplasmic	35	98	0.86
Transmembrane Helix	99	118	0.92
Non-Cytoplasmic	119	146	0.76
Transmembrane Helix	147	168	0.87
Cytoplasmic	169	187	0.82
Transmembrane Helix	188	213	0.86
Non-Cytoplasmic	214	229	0.77
Transmembrane Helix	230	250	0.68
Cytoplasmic	251	327	0.53
Transmembrane Helix	328	350	0.89
Non-Cytoplasmic	351	368	0.51
Transmembrane Helix	369	395	0.79
Cytoplasmic	396	405	0.47
Transmembrane Helix	406	426	0.93
Non-Cytoplasmic	427	456	0.49
Transmembrane Helix	457	478	0.77
Cytoplasmic	479	479	0.28
Transmembrane Helix	480	506	0.70
Non-Cytoplasmic	507	541	0.53
Transmembrane Helix	542	565	0.85
Cytoplasmic	566	573	0.47
Transmembrane Helix	574	595	0.88
Non-Cytoplasmic	596	650	0.52
Transmembrane Helix	651	681	0.70
Cytoplasmic	682	742	0.67
Transmembrane Helix	743	766	0.75
Non-Cytoplasmic	767	770	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAPALLPEL WTEILVPICA VIGIAFSLFQ WYVVSRVKLT SDLGASSSGG ANNGKNGYGD  60
   61 YLIEEEEGVN DQSVVAKCAE IQTAISEGAT SFLFTEYKYV GVFMIFFAAV IFVFLGSVEG 120
  121 FSTDNKPCTY DTTRTCKPAL ATAAFSTIAF VLGAVTSVLS GFLGMKIATY ANARTTLEAR 180
  181 KGVGKAFIVA FRSGAVMGFL LAASGLLVLY ITINVFKIYY GDDWEGLFEA ITGYGLGGSS 240
  241 MALFGRVGGG IYTKAADVGA DLVGKIERNI PEDDPRNPAV IADNVGDNVG DIAGMGSDLF 300
  301 GSYAEASCAA LVVASISSFG INHDFTAMCY PLLISSMGIL VCLITTLFAT DFFEIKLVKE 360
  361 IEPALKNQLI ISTVIMTVGI AIVSWVGLPT SFTIFNFGTQ KVVKNWQLFL CVCVGLWAGL 420
  421 IIGFVTEYYT SNAYSPVQDV ADSCRTGAAT NVIFGLALGY KSVIIPIFAI AISIFVSFSF 480
  481 AAMYGVAVAA LGMLSTIATG LAIDAYGPIS DNAGGIAEMA GMSHRIRERT DALDAAGNTT 540
  541 AAIGKGFAIG SAALVSLALF GAFVSRAGIH TVDVLTPKVI IGLLVGAMLP YWFSAMTMKS 600
  601 VGSAALKMVE EVRRQFNTIP GLMEGTAKPD YATCVKISTD ASIKEMIPPG CLVMLTPLIV 660
  661 GFFFGVETLS GVLAGSLVSG VQIAISASNT GGAWDNAKKY IEAGVSEHAK SLGPKGSEPH 720
  721 KAAVIGDTIG DPLKDTSGPS LNILIKLMAV ESLVFAPFFA THGGILFKYF