YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATP61_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRIFLFDEN SLNSSSTIDT SSASTIDTSF ASQCTNFSSG QASGTQDTHA GIFEDCPGLN  60
   61 PNDERVVELQ CEIREKCEAL TQDPEMGLIL GEALHAESDN VPFLQSIADD LTQNGVSGEA 120
  121 FQEALNIVGQ AAASPLDQFE IVPLIPMHIG NFYFSFTNSS LFMLLTLSFF LLLIHFVTKK 180
  181 GGGNLVPNAW QSLVELLYDF VLNLVKEQIG GLSGNVKQMF FPCILVTFLF LLFCNLQGMI 240
  241 PYSFTVTSHF LITLALSFSI FIGITIVGFQ RHGLHFFSFL LPAGVPLPLA PFLVLLELIS 300
  301 YCFRALSLGI RLFANMMAGH SLVKILSGFA WTMLCMNDIF YFIGALGPLF IVLALTGLEL 360
  361 GVAILQAYVF TILICIYLND AINLH

Type	Start	End	Confidence
Cytoplasmic	1	153	0.92
Transmembrane Helix	154	177	0.88
Non-Cytoplasmic	178	217	0.88
Transmembrane Helix	218	239	0.90
Cytoplasmic	240	248	0.68
Transmembrane Helix	249	269	0.93
Non-Cytoplasmic	270	278	0.71
Transmembrane Helix	279	303	0.76
Cytoplasmic	304	321	0.57
Transmembrane Helix	322	345	0.72
Non-Cytoplasmic	346	348	0.40
Transmembrane Helix	349	378	0.74
Cytoplasmic	379	385	0.67