YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AT13_ARATH, AMT1...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.87
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.87
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	50	0.91
Transmembrane Helix	51	72	0.91
Cytoplasmic	73	81	0.83
Transmembrane Helix	82	104	0.83
Non-Cytoplasmic	105	131	0.89
Transmembrane Helix	132	151	0.93
Cytoplasmic	152	157	0.87
Transmembrane Helix	158	179	0.93
Non-Cytoplasmic	180	199	0.95
Transmembrane Helix	200	223	0.89
Cytoplasmic	224	238	0.94
Transmembrane Helix	239	260	0.90
Non-Cytoplasmic	261	284	0.93
Transmembrane Helix	285	306	0.90
Cytoplasmic	307	314	0.80
Transmembrane Helix	315	334	0.88
Non-Cytoplasmic	335	340	0.68
Transmembrane Helix	341	361	0.85
Cytoplasmic	362	371	0.80
Transmembrane Helix	372	391	0.86
Non-Cytoplasmic	392	420	0.88
Transmembrane Helix	421	443	0.93
Cytoplasmic	444	519	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGAITCSAA DLATLLGPNA TAAADYICGQ LGTVNNKFTD AAFAIDNTYL LFSAYLVFAM  60
   61 QLGFAMLCAG SVRAKNTMNI MLTNVLDAAA GGLFYYLFGY AFAFGGSSEG FIGRHNFALR 120
  121 DFPTPTADYS FFLYQWAFAI AAAGITSGSI AERTQFVAYL IYSSFLTGFV YPVVSHWFWS 180
  181 PDGWASPFRS ADDRLFSTGA IDFAGSGVVH MVGGIAGLWG ALIEGPRRGR FEKGGRAIAL 240
  241 RGHSASLVVL GTFLLWFGWY GFNPGSFTKI LVPYNSGSNY GQWSGIGRTA VNTTLSGCTA 300
  301 ALTTLFGKRL LSGHWNVTDV CNGLLGGFAA ITAGCSVVEP WAAIVCGFMA SVVLIGCNKL 360
  361 AELVQYDDPL EAAQLHGGCG AWGLIFVGLF AKEKYLNEVY GATPGRPYGL FMGGGGKLLG 420
  421 AQLVQILVIV GWVSATMGTL FFILKRLNLL RISEQHEMQG MDMTRHGGFA YIYHDNDDES 480
  481 HRVDPGSPFP RSALLLAFNF QLFGNLLPFK YCLGFGFEI