YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AMT11_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.59
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	18	0.59
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	46	0.89
Transmembrane Helix	47	68	0.90
Cytoplasmic	69	77	0.83
Transmembrane Helix	78	99	0.86
Non-Cytoplasmic	100	127	0.92
Transmembrane Helix	128	147	0.93
Cytoplasmic	148	153	0.88
Transmembrane Helix	154	175	0.93
Non-Cytoplasmic	176	195	0.94
Transmembrane Helix	196	219	0.89
Cytoplasmic	220	234	0.93
Transmembrane Helix	235	256	0.90
Non-Cytoplasmic	257	280	0.94
Transmembrane Helix	281	302	0.91
Cytoplasmic	303	310	0.80
Transmembrane Helix	311	330	0.92
Non-Cytoplasmic	331	336	0.76
Transmembrane Helix	337	357	0.92
Cytoplasmic	358	367	0.94
Transmembrane Helix	368	387	0.94
Non-Cytoplasmic	388	416	0.94
Transmembrane Helix	417	440	0.93
Cytoplasmic	441	501	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSCSATDLAV LLGPNATAAA NYICGQLGDV NNKFIDTAFA IDNTYLLFSA YLVFSMQLGF  60
   61 AMLCAGSVRA KNTMNIMLTN VLDAAAGGLF YYLFGYAFAF GSPSNGFIGK HYFGLKDIPT 120
  121 ASADYSNFLY QWAFAIAAAG ITSGSIAERT QFVAYLIYSS FLTGFVYPVV SHWFWSVDGW 180
  181 ASPFRTDGDL LFSTGAIDFA GSGVVHMVGG IAGLWGALIE GPRLGRFDNG GRAIALRGHS 240
  241 ASLVVLGTFL LWFGWYGFNP GSFNKILVTY ETGTYNGQWS AVGRTAVTTT LAGCTAALTT 300
  301 LFGKRLLSGH WNVTDVCNGL LGGFAAITGG CSVVEPWAAI ICGFVAALVL LGCNKLAEKL 360
  361 KYDDPLEAAQ LHGGCGAWGL IFTALFAQEK YLNQIYGNKP GRPHGLFMGG GGKLLGAQLI 420
  421 QIIVITGWVS ATMGTLFFIL KKMKLLRISS EDEMAGMDMT RHGGFAYMYF DDDESHKAIQ 480
  481 LRRVEPRSPS PSGANTTPTP V