YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	APH1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVAAGIGYA LVALGPSLSL FVSVISRKPF LILTVLSSTL LWLVSLIILS GLWRPFLPLK  60
   61 ANVWWPYALL VITSVCFQEG LRFLFWKVYK RLEDVLDSFA DRISRPRLFL TDKLQIALAG 120
  121 GLGHGVAHAV FFCLSLLTPA FGPATFYVER CSKVPFFLIS AIIALAFVTI HTFSMVIAFE 180
  181 GYAKGNKVDQ IIVPVIHLTA GMLTLVNFAS EGCVIGVPLL YLVASLTLVH CGKMVWQRLL 240
  241 ESRNQSSASR

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.74
Transmembrane Helix	6	25	0.88
Cytoplasmic	26	31	0.70
Transmembrane Helix	32	53	0.91
Non-Cytoplasmic	54	62	0.73
Transmembrane Helix	63	86	0.83
Cytoplasmic	87	115	0.81
Transmembrane Helix	116	141	0.78
Non-Cytoplasmic	142	155	0.69
Transmembrane Helix	156	179	0.88
Cytoplasmic	180	189	0.70
Transmembrane Helix	190	209	0.78
Non-Cytoplasmic	210	213	0.68
Transmembrane Helix	214	236	0.83
Cytoplasmic	237	250	0.91