YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALG6_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	36	0.88
Transmembrane Helix	37	57	0.85
Non-Cytoplasmic	58	150	0.86
Transmembrane Helix	151	170	0.93
Cytoplasmic	171	181	0.81
Transmembrane Helix	182	203	0.90
Non-Cytoplasmic	204	211	0.75
Transmembrane Helix	212	235	0.84
Cytoplasmic	236	264	0.85
Transmembrane Helix	265	286	0.93
Non-Cytoplasmic	287	309	0.90
Transmembrane Helix	310	324	0.53
Cytoplasmic	325	334	0.41
Transmembrane Helix	335	354	0.71
Non-Cytoplasmic	355	359	0.60
Transmembrane Helix	360	380	0.69
Cytoplasmic	381	421	0.60
Transmembrane Helix	422	441	0.84
Non-Cytoplasmic	442	462	0.84
Transmembrane Helix	463	481	0.96
Cytoplasmic	482	490	0.78
Transmembrane Helix	491	512	0.93
Non-Cytoplasmic	513	533	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKKKPAKHS GEDDITIPVS PQTGSSIDTW WWLTHKGTTT SFLCISLFAL LIRSAVTMYP  60
   61 YSGAGIPPKF GDFEAQRHWM EITTNLPVID WYRNGTYNDL TYWGLDYPPL TAYQSYIHGI 120
  121 FLRFFNPESV ALLSSRGHES YLGKLLMRWT VLSSDAFIFF PAALFFVLVY HRNRTRGGKS 180
  181 EVAWHIAMIL LNPCLILIDH GHFQYNCISL GLTVGAIAAV LCESEVLTCV LFSLALSHKQ 240
  241 MSAYFAPAFF SHLLGKCLRR KSPILSVIKL GIAVIVTFVI FWWPYVHSLD DFLMVLSRLA 300
  301 PFERGIYEDY VANFWCTTSI LIKWKNLFTT QSLKSISLAA TILASLPSMV QQILSPSNEG 360
  361 FLYGLLNSSM AFYLFSFQVH EKSILMPFLS ATLLALKLPD HFSHLTYYAL FSMFPLLCRD 420
  421 KLLIPYLTLS FLFTVIYHSP GNHHAIQKTD VSFFSFKNFP GYVFLLRTHF FISVVLHVLY 480
  481 LTIKPPQKYP FLFEALIMIL CFSYFIMFAF YTNYTQWTLS SHFGSSDKEK KQI