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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ALA7_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.47
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRRRIRSRI RKSHFYTFKC LRPKTLEDQG PHIINGPGYT RIVHCNQPHL HLAKVLRYTS  60
   61 NYVSTTRYNL ITFLPKCLYE QFHRVANFYF LVAAILSVFP LSPFNKWSMI APLIFVVGLS 120
  121 MGKEALEDWR RFMQDVKVNS RKATVHRGDG DFGRRKWKKL RVGDVVKVEK DQFFPADLLL 180
  181 LSSSYEDGIC YVETMNLDGE TNLKVKRCLD VTLPLERDDT FQSFSGTIKC EDPNPNLYTF 240
  241 VGNLEYDGQV YPLDPSQILL RDSKLRNTSY VYGVVVFTGH DTKVMQNSTK SPSKRSRIEK 300
  301 RMDYIIYTLF ALLVLVSFIS SLGFAVMTKM HMGDWWYLRP DKPERLTNPR NPFHAWVVHL 360
  361 ITAVLLYGYL IPISLYVSIE LVKVLQATFI NQDLQMYDSE SGTPAQARTS NLNEELGQVD 420
  421 TILSDKTGTL TCNQMDFLKC SIAGTSYGVR ASEVELAAAK QMAIDLDEEQ GEEVTHLPRT 480
  481 RGRMHGYAKM PSKTSSDIEL ETVITATDEG DQTQSTGIKG FSFEDQRLMG GNWLNEPNSD 540
  541 DILMFLRILA VCHTAIPEVD EDTGKCTYEA ESPDEVAFLV AAGEFGFEFT KRTQSSVFIS 600
  601 ERHSGQPVER IFYREYKFLN VLDFTSKRKR MSVIVRDEKG QILLLCKGAD SIIFERLSKN 660
  661 GKNYLEATSK HLNGYGEAGL RTLALSYRKL DETEYSIWNS EFHKAKTSVG ADRDEMLEKV 720
  721 SDMMEKELIL VGATAVEDKL QKGVPQCIDK LAQAGLKIWV LTGDKMETAI NIGYACSLLR 780
  781 QGMKQIYIAL RNEEGSSQDP EAAARENILM QIINASQMIK LEKDPHAAFA LIIDGKTLTY 840
  841 ALEDDIKYQF LALAVDCASV ICCRVSPKQK ALVTRLAKEG TGKTTLAIGD GANDVGMIQE 900
  901 ADIGVGISGV EGMQAVMASD FSIAQFRFLE RLLVVHGHWC YKRIAQMICY FFYKNITFGL 960
  961 TLFYFEAFTG FSGQAIYNDS YLLLFNVILT SLPVIALGVF EQDVSSEVCL QFPALYQQGP1020
 1021 KNLFFDWYRI IGWMANGVYA SVVIFSLNIG IFHVQSFCSG GQTADMDAMG TAMFTCIIWA1080
 1081 VNVQIALTMS HFTWIQHVLI WGSIVTWYIF LALFGMLPPK VSGNIFHMLS ETLAPAPIFW1140
 1141 LTSLLVIAAT TLPYLAYISF QRSLNPLDHH IIQEIKHFRI DVQDECMWTR ERSKAREKTK1200
 1201 IGVTARVDAK IRQLRGRLQR KHSILSVMSG LSGVSASTDT TSTTQHS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle