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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ALA4_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.74
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARGRIRSKL RLSHIYTFGC LRPSADEGQD PHPIQGPGFS RTVYCNQPHM HKKKPLKYRS  60
   61 NYVSTTRYNL ITFFPKCLYE QFHRAANFYF LVAAILSVFP LSPFNKWSMI APLVFVVGLS 120
  121 MLKEALEDWS RFMQDVKINA SKVYVHKSDG EFRRRKWKKI SVGDIVKVEK DGFFPADLLL 180
  181 LSSSYEDGIC YVETMNLDGE TNLKVKRSLE VTLSLDDYDS FKDFTGIIRC EDPNPSLYTF 240
  241 VGNLEYERQI FPLDPSQILL RDSKLRNTPY VYGVVVFTGH DTKVMQNSTK SPSKRSRIEK 300
  301 TMDYIIYTLL VLLILISCIS SSGFAWETKF HMPKWWYLRP EEPENLTNPS NPVYAGFVHL 360
  361 ITALLLYGYL IPISLYVSIE VVKVLQASFI NKDLHMYDSE SGVPAHARTS NLNEELGQVD 420
  421 TILSDKTGTL TCNQMDFLKC SIAGTSYGVR SSEVEVAAAQ QMAVDLDEHG EVSSRTSTPR 480
  481 AQARDIEVES SITPRIPIKG FGFEDIRLMD GNWLREPHTD DILLFFRILA ICHTAIPELN 540
  541 EETGKYTYEA ESPDEASFLT AASEFGFVFF KRTQSSVYVH ERLSHSGQTI EREYKVLNLL 600
  601 DFTSKRKRMS VVVRDEEGQI LLLCKGADSI IFERLAKNGK VYLGPTTKHL NEYGEAGLRT 660
  661 LALSYRKLDE EEYSAWNAEF HKAKTSIGSD RDELLERISD MIEKDLILVG ATAVEDKLQK 720
  721 GVPQCIDKLA QAGLKLWVLT GDKMETAINI GYSCSLLRQG MKQICITVVN SEGASQDAKA 780
  781 VKDNILNQIT KAVQMVKLEK DPHAAFALII DGKTLTYALE DEMKYQFLAL AVDCASVICC 840
  841 RVSPKQKALV TRLVKEGTGK ITLAIGDGAN DVGMIQEADI GVGISGVEGM QAVMASDFSI 900
  901 AQFRFLERLL VVHGHWCYKR IAQMICYFFY KNIAFGLTLF YFEAFTGFSG QSVYNDYYLL 960
  961 LFNVVLTSLP VIALGVFEQD VSSEICLQFP ALYQQGKKNL FFDWYRILGW MGNGVYSSLV1020
 1021 IFFLNIGIIY EQAFRVSGQT ADMDAVGTTM FTCIIWAVNV QIALTVSHFT WIQHVLIWGS1080
 1081 IGLWYLFVAL YGMMPPSLSG NIYRILVEIL APAPIYWIAT FLVTVTTVLP YFAHISFQRF1140
 1141 LHPLDHHIIQ EIKYYKRDVE DRRMWTRERT KAREKTKIGF TARVDAKIRH LRSKLNKKQS1200
 1201 NMSQFSTQDT MSPRSV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle