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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: HMA2_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.84
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASKKMTKSY FDVLGICCTS EVPLIENILN SMDGVKEFSV IVPSRTVIVV HDTLILSQFQ  60
   61 IVKALNQAQL EANVRVTGET NFKNKWPSPF AVVSGILLLL SFFKYLYSPF RWLAVAAVVA 120
  121 GIYPILAKAV ASLARFRIDI NILVVVTVGA TIGMQDYTEA AVVVFLFTIA EWLQSRASYK 180
  181 ASAVMQSLMS LAPQKAVIAE TGEEVEVDEL KTNTVIAVKA GETIPIDGVV VDGNCEVDEK 240
  241 TLTGEAFPVP KLKDSTVWAG TINLNGYITV NTTALAEDCV VAKMAKLVEE AQNSKTETQR 300
  301 FIDKCSKYYT PAIILISICF VAIPFALKVH NLKHWVHLAL VVLVSACPCG LILSTPVATF 360
  361 CALTKAATSG LLIKGADYLE TLAKIKIVAF DKTGTITRGE FIVMDFQSLS EDISLQSLLY 420
  421 WVSSTESKSS HPMAAAVVDY ARSVSVEPKP EAVEDYQNFP GEGIYGKIDG KEVYIGNKRI 480
  481 ASRAGCLSVP DIDVDTKGGK TIGYVYVGET LAGVFNLSDA CRSGVAQAMK ELKSLGIKIA 540
  541 MLTGDNHAAA MHAQEQLGNA MDIVRAELLP EDKSEIIKQL KREEGPTAMV GDGLNDAPAL 600
  601 ATADIGISMG VSGSALATET GNIILMSNDI RRIPQAIKLA KRAKRKVVEN VVISITMKGA 660
  661 ILALAFAGHP LIWAAVLADV GTCLLVILNS MLLLSDKHKT GNKCYRESSS SSVLIAEKLE 720
  721 GDAAGDMEAG LLPKISDKHC KPGCCGTKTQ EKAMKPAKAS SDHSHSGCCE TKQKDNVTVV 780
  781 KKSCCAEPVD LGHGHDSGCC GDKSQQPHQH EVQVQQSCHN KPSGLDSGCC GGKSQQPHQH 840
  841 ELQQSCHDKP SGLDIGTGPK HEGSSTLVNL EGDAKEELKV LVNGFCSSPA DLAITSLKVK 900
  901 SDSHCKSNCS SRERCHHGSN CCRSYAKESC SHDHHHTRAH GVGTLKEIVI E

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle