YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PIN8_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.66
Transmembrane Helix	13	33	0.78
Cytoplasmic	34	40	0.79
Transmembrane Helix	41	62	0.72
Non-Cytoplasmic	63	70	0.82
Transmembrane Helix	71	90	0.94
Cytoplasmic	91	98	0.82
Transmembrane Helix	99	121	0.89
Non-Cytoplasmic	122	131	0.80
Transmembrane Helix	132	152	0.91
Cytoplasmic	153	195	0.96
Transmembrane Helix	196	218	0.85
Non-Cytoplasmic	219	233	0.75
Transmembrane Helix	234	255	0.82
Cytoplasmic	256	265	0.68
Transmembrane Helix	266	291	0.76
Non-Cytoplasmic	292	297	0.65
Transmembrane Helix	298	315	0.60
Cytoplasmic	316	323	0.52
Transmembrane Helix	324	347	0.89
Non-Cytoplasmic	348	351	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINCGDVYKV IEAMVPLYVA LILGYGSVKW WHIFTRDQCD AINRLVCYFT LPLFTIEFTA  60
   61 HVDPFNMNYR FIAADVLSKV IIVTVLALWA KYSNKGSYCW SITSFSLCTL TNSLVVGVPL 120
  121 AKAMYGQQAV DLVVQSSVFQ AIVWLTLLLF VLEFRKAGFS SNNISDVQVD NINIESGKRE 180
  181 TVVVGEKSFL EVMSLVWLKL ATNPNCYSCI LGIAWAFISN RWHLELPGIL EGSILIMSKA 240
  241 GTGTAMFNMG IFMALQEKLI VCGTSLTVMG MVLKFIAGPA AMAIGSIVLG LHGDVLRVAI 300
  301 IQAALPQSIT SFIFAKEYGL HADVLSTAVI FGMLVSLPVL VAYYAALEFI H