YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PIN5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.61
Transmembrane Helix	7	28	0.87
Cytoplasmic	29	40	0.57
Transmembrane Helix	41	59	0.48
Non-Cytoplasmic	60	75	0.73
Transmembrane Helix	76	94	0.92
Cytoplasmic	95	102	0.81
Transmembrane Helix	103	126	0.88
Non-Cytoplasmic	127	136	0.71
Transmembrane Helix	137	157	0.82
Cytoplasmic	158	217	0.88
Transmembrane Helix	218	238	0.90
Non-Cytoplasmic	239	257	0.75
Transmembrane Helix	258	278	0.81
Cytoplasmic	279	287	0.57
Transmembrane Helix	288	307	0.81
Non-Cytoplasmic	308	312	0.58
Transmembrane Helix	313	333	0.67
Cytoplasmic	334	341	0.51
Transmembrane Helix	342	365	0.90
Non-Cytoplasmic	366	367	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISWLDIYHV VSATVPLYVS MTLGFLSARH LKLFSPEQCA GINKFVAKFS IPLLSFQIIS  60
   61 ENNPFKMSPK LILSDILQKF LVVVVLAMVL RFWHPTGGRG GKLGWVITGL SISVLPNTLI 120
  121 LGMPILSAIY GDEAASILEQ IVVLQSLIWY TILLFLFELN AARALPSSGA SLEHTGNDQE 180
  181 EANIEDEPKE EEDEEEVAIV RTRSVGTMKI LLKAWRKLII NPNTYATLIG IIWATLHFRL 240
  241 GWNLPEMIDK SIHLLSDGGL GMAMFSLGLF MASQSSIIAC GTKMAIITML LKFVLGPALM 300
  301 IASAYCIRLK STLFKVAILQ AALPQGVVPF VFAKEYNLHP EIISTGVIFG MLIALPTTLA 360
  361 YYFLLDL