YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PIN4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.88
Transmembrane Helix	8	31	0.86
Cytoplasmic	32	40	0.86
Transmembrane Helix	41	60	0.92
Non-Cytoplasmic	61	70	0.86
Transmembrane Helix	71	92	0.86
Cytoplasmic	93	101	0.81
Transmembrane Helix	102	123	0.93
Non-Cytoplasmic	124	131	0.71
Transmembrane Helix	132	152	0.94
Cytoplasmic	153	470	0.99
Transmembrane Helix	471	491	0.89
Non-Cytoplasmic	492	500	0.85
Transmembrane Helix	501	522	0.87
Cytoplasmic	523	536	0.74
Transmembrane Helix	537	558	0.87
Non-Cytoplasmic	559	564	0.68
Transmembrane Helix	565	582	0.58
Cytoplasmic	583	590	0.50
Transmembrane Helix	591	614	0.91
Non-Cytoplasmic	615	616	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITWHDLYTV LTAVVPLYVA MILAYGSVQW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS  60
   61 TNDPYAMNFR FVAADTLQKI IMLVLLALWA NLTKNGSLEW MITIFSLSTL PNTLVMGIPL 120
  121 LIAMYGTYAG SLMVQVVVLQ CIIWYTLLLF LFEYRGAKLL IMEQFPETGA SIVSFKVESD 180
  181 VVSLDGHDFL ETDAEIGNDG KLHVTVRKSN ASRRSLMMTP RPSNLTGAEI YSLSSTPRGS 240
  241 NFNHSDFYSV MGFPGGRLSN FGPADLYSVQ SSRGPTPRPS NFEENNAVKY GFYNNTNSSV 300
  301 PAAGSYPAPN PEFSTGTGVS TKPNKIPKEN QQQLQEKDSK ASHDAKELHM FVWSSSASPV 360
  361 SDVFGGGAGD NVATEQSEQG AKEIRMVVSD QPRKSNARGG GDDIGGLDSG EGEREIEKAT 420
  421 AGLNKMGSNS TAELEAAGGD GGGNNGTHMP PTSVMTRLIL IMVWRKLIRN PNTYSSLIGL 480
  481 IWALVAYRWH VAMPKILQQS ISILSDAGLG MAMFSLGLFM ALQPKIIACG NSVATFAMAV 540
  541 RFITGPAIMA VAGIAIGLHG DLLRIAIVQA ALPQGIVPFV FAKEYNVHPT ILSTGVIFGM 600
  601 LIALPITLVY YILLGL