YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PIN3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.95
Transmembrane Helix	7	28	0.90
Cytoplasmic	29	40	0.80
Transmembrane Helix	41	60	0.94
Non-Cytoplasmic	61	70	0.85
Transmembrane Helix	71	92	0.87
Cytoplasmic	93	101	0.83
Transmembrane Helix	102	123	0.94
Non-Cytoplasmic	124	131	0.78
Transmembrane Helix	132	152	0.95
Cytoplasmic	153	495	0.99
Transmembrane Helix	496	516	0.90
Non-Cytoplasmic	517	524	0.81
Transmembrane Helix	525	546	0.87
Cytoplasmic	547	560	0.69
Transmembrane Helix	561	582	0.88
Non-Cytoplasmic	583	588	0.68
Transmembrane Helix	589	606	0.56
Cytoplasmic	607	613	0.46
Transmembrane Helix	614	638	0.89
Non-Cytoplasmic	639	640	0.50

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISWHDLYTV LTAVIPLYVA MILAYGSVRW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS  60
   61 TNNPYAMNLR FIAADTLQKI IMLSLLVLWA NFTRSGSLEW SITIFSLSTL PNTLVMGIPL 120
  121 LIAMYGEYSG SLMVQIVVLQ CIIWYTLLLF LFEFRGAKML IMEQFPETAA SIVSFKVESD 180
  181 VVSLDGHDFL ETDAEIGDDG KLHVTVRKSN ASRRSFCGPN MTPRPSNLTG AEIYSLSTTP 240
  241 RGSNFNHSDF YNMMGFPGGR LSNFGPADMY SVQSSRGPTP RPSNFEENCA MASSPRFGYY 300
  301 PGGGAGSYPA PNPEFSSTTT STANKSVNKN PKDVNTNQQT TLPTGGKSNS HDAKELHMFV 360
  361 WSSNGSPVSD RAGLNVFGGA PDNDQGGRSD QGAKEIRMLV PDQSHNGETK AVAHPASGDF 420
  421 GGEQQFSFAG KEEEAERPKD AENGLNKLAP NSTAALQSKT GLGGAEASQR KNMPPASVMT 480
  481 RLILIMVWRK LIRNPNTYSS LIGLIWALVA FRWHVAMPKI IQQSISILSD AGLGMAMFSL 540
  541 GLFMALQPKL IACGNSVATF AMAVRFLTGP AVMAVAAIAI GLRGDLLRVA IVQAALPQGI 600
  601 VPFVFAKEYN VHPAILSTGV IFGMLIALPI TLVYYILLGL