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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ACA10_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.77
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGQFNNSPR GEDKDVEAGT SSFTEYEDSP FDIASTKNAP VERLRRWRQA ALVLNASRRF  60
   61 RYTLDLKREE DKKQMLRKMR AHAQAIRAAH LFKAAASRVT GIASPLPTPG GGDFGIGQEQ 120
  121 IVSISRDQNI GALQELGGVR GLSDLLKTNL EKGIHGDDDD ILKRKSAFGS NTYPQKKGRS 180
  181 FWRFVWEASQ DLTLIILIVA AVASLALGIK TEGIEKGWYD GISIAFAVLL VIVVTATSDY 240
  241 RQSLQFQNLN EEKRNIRLEV TRDGRRVEIS IYDIVVGDVI PLNIGDQVPA DGVLVAGHSL 300
  301 AVDESSMTGE SKIVQKNSTK HPFLMSGCKV ADGNGTMLVT GVGVNTEWGL LMASVSEDNG 360
  361 GETPLQVRLN GVATFIGIVG LTVAGVVLFV LVVRYFTGHT KNEQGGPQFI GGKTKFEHVL 420
  421 DDLVEIFTVA VTIVVVAVPE GLPLAVTLTL AYSMRKMMAD KALVRRLSAC ETMGSATTIC 480
  481 SDKTGTLTLN EMTVVECYAG LQKMDSPDSS SKLPSAFTSI LVEGIAHNTT GSVFRSESGE 540
  541 IQVSGSPTER AILNWAIKLG MDFDALKSES SAVQFFPFNS EKKRGGVAVK SPDSSVHIHW 600
  601 KGAAEIVLGS CTHYMDESES FVDMSEDKMG GLKDAIDDMA ARSLRCVAIA FRTFEADKIP 660
  661 TDEEQLSRWE LPEDDLILLA IVGIKDPCRP GVKNSVLLCQ QAGVKVRMVT GDNIQTAKAI 720
  721 ALECGILASD SDASEPNLIE GKVFRSYSEE ERDRICEEIS VMGRSSPNDK LLLVQSLKRR 780
  781 GHVVAVTGDG TNDAPALHEA DIGLAMGIQG TEVAKEKSDI IILDDNFESV VKVVRWGRSV 840
  841 YANIQKFIQF QLTVNVAALV INVVAAISAG EVPLTAVQLL WVNLIMDTLG ALALATEPPT 900
  901 DHLMDRAPVG RREPLITNIM WRNLFIQAMY QVTVLLILNF RGISILHLKS KPNAERVKNT 960
  961 VIFNAFVICQ VFNEFNARKP DEINIFRGVL RNHLFVGIIS ITIVLQVVIV EFLGTFASTT1020
 1021 KLDWEMWLVC IGIGSISWPL AVIGKLIPVP ETPVSQYFRI NRWRRNSSG

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle