YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALB32_ARATH
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVWRSCLRA SSSRHRLSSL FFSHHLKPSS FISHSPPLFS PSPSPSPTCF SPLHRLLSSG  60
   61 PEFPIGSQEI IPTDDSSLPV LAVVDFLEGF HEFTGLPWWM IIASSTVAVR LALLPLLILQ 120
  121 LKKLKTISEL LPKLPMPIPE TPTLKGSIDQ FSHFLKESRA IGCPSFLWFF PYLSVQLPCF 180
  181 FLLMASIRKM SLDGHPGFDS GGVLWFQNLS DLPGGSFGPV FPILIATFHY INIQISFDTS 240
  241 TIRQTTGLTG LLMRYYKLYL EILSVPLFFV GYAIPQGSLV YWVTNSSVNI FQQLSLKHPT 300
  301 VGAKLGLLSQ GATPGMGHSM EISESVIKYV DSDSKEQTLS LQTLTPEELL SLSVQVLSKG 360
  361 DKETSIQLLR LALEKDPGYV RGLVLMGQAL LQKTQLSEAT EYLELAISKL LDEDPSDAED 420
  421 VELLMLASQW AGAAYVQQGK LKSGIIHLER VAKLREPGDP KSKEHYFEAL LLLSSALYKE 480
  481 GQSDEAAKIL RVVVDHNPAY KPLLEQCEDE NELVSDLVSR RKDHF

Type	Start	End	Confidence
Cytoplasmic	1	20	0.69
Transmembrane Helix	21	38	0.67
Non-Cytoplasmic	39	95	0.94
Transmembrane Helix	96	119	0.87
Cytoplasmic	120	165	0.96
Transmembrane Helix	166	187	0.92
Non-Cytoplasmic	188	211	0.92
Transmembrane Helix	212	233	0.87
Cytoplasmic	234	261	0.83
Transmembrane Helix	262	283	0.83
Non-Cytoplasmic	284	525	0.94