YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16080879, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.99
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	218	0.99
Transmembrane Helix	219	243	0.85
Cytoplasmic	244	254	0.88
Transmembrane Helix	255	278	0.91
Non-Cytoplasmic	279	287	0.87
Transmembrane Helix	288	309	0.94
Cytoplasmic	310	333	0.88
Transmembrane Helix	334	356	0.81
Non-Cytoplasmic	357	368	0.75
Transmembrane Helix	369	388	0.95
Cytoplasmic	389	398	0.78
Transmembrane Helix	399	420	0.90
Non-Cytoplasmic	421	444	0.87
Transmembrane Helix	445	466	0.86
Cytoplasmic	467	481	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARGLALILF SLLMVFGSAA HAEDDPIAAL IQLNKQMIKS VKDGDMDSAQ QTFDTFKAKW  60
   61 KKEEPSIKKE NLSSHSEMDA NIAMISLSFI NQDARKLKTQ LEELASHLET YQQAVVLKKT 120
  121 SSGQSRASLT AYIQSLKDTK QFIEKKQLDE ASSAIDNLVT SWLAVEGDVV SQSKEAYTTC 180
  181 HQNLALMKAE IGSHPEKVSK QIDEMIQLLE PIASSSYSWW DAALIPVREG MEALLVIGAL 240
  241 LTMTKKARVT RSSTWIWGGA SAGMAVSLAA GIGVTVLFSS SVFGENNFLL GGVTGVLSAV 300
  301 MLLYVGVWLH RNASMDKWRE KINIQKSQAL KKRSLLSFAL IAFLAVVREG LETVIFFIGL 360
  361 VGKLPLTELI GGTAAGLIVL VIVGVLMIKL GMRIPLKPFF LLSMAVVLYM CVKFLGTGVH 420
  421 SLQLAGILPS DAESWLPSVS VLGIYPSVYS TIPQMLILLF LLIALVSEAA KHFTNGKELT 480
  481 K